Tuesday, March 3, 2009

March 09 update

Trying to stick to the theme with these. First a couple of articles on Luca, the Last Universal Common Ancestor. I think this a great concept, after all evol theory predicts such an ancestor so why not try to characterise it via modern genetics?

The Annilas are attempting to explain the origin of life within the context of thermodynamics. Living organisms are extremely complex examples of the tendency for chemical reactions to occur which redistribute energy to achieve maximum entropy. I think this is right although I am inclined to think that the laws governing the flow of information start playing a part very early on, and influence the outcome. What are these laws? Well natural selection and related principles obviously. Genetic drift.  I'm sure there are others though I have difficulty pinning them down. You need a finite set of symbols that can be combined in infinite ways.  Agents that can exchange these symbols within a framework of common intelligibility. Can this really all develop from chemical reactions that redistribute energy? Well yes, but the network needs to be there from the start. This is why I've thought perhaps a spongelike substrate being the habitat of LUCA. And that LUCA may have been a sort of super organism, like the fungi today that cover vast areas. Anyway, next item:

Turns out RNA can combine to form long chains under certain conditions. 
Evidence found of multicellular organisms that predate the Ediacaran fauna?
Well perhaps more like around the same time, but dating the ediacarans has been problematical.
Horizontal transfer of genes between mammal species. DNA just keeps finding new ways of getting around.

And finally a completely irrelevant one, the roar from outer space."The universe really threw us a curve," Kogut said. "Instead of the faint signal we hoped to find, here was this booming noise six times louder than anyone had predicted."

Saturday, November 22, 2008

Giant cell leaves tracks

Amazing discovery throws light on ancient fossils.

Life and thermodynamics

I still haven't read this article myself but a scan indicates it may be a good wrap up of the facsinating intersection between biology and thermodynamics from Scientific American.

Entropy and evolution

This paper by Dan Styer attempts to calculate the entropy of evolution. An interesting discussion ensues at Pharyngula. I comment at #275, without significant impact on the discussion unfortunately, which by that time had gotten a bit sidetracked anyway.

Update overdue

Nearly 2 months since last update, its almost a relief to get my traffic reports which confirm that absolutely nobody ever reads this blog. Anyway, heres my latest grab bag:

Wednesday, September 10, 2008

LHC booted up

Only one sunset so far tonight so it seems the LHC start up hasn't brought about the end of the world yet.

Another IT approach to solving biological enigmas. We're starting to  untangle the deep informational structure of the global genome. I can't help thinking again that these tools will also lead to AI breakthoroughs, the potential is breathtaking. 

August news

Modularity and abstraction in a computer language? Its about time! Deep Thought not far away.